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MCSE : Security Specialist Windows 2000 and Windows Server 2003 servers running Directory Services (DS) perform a directory online defragmentation every 12 hours by default as part of the garbage-collection process. This defragmentation only moves data around the database file (NTDS.DIT) and doesn’t reduce the file’s size - the database file cannot be compacted while Active Directory is mounted. Active Directory routinely performs online database defragmentation, but this is limited to the disposal of tombstoned objects. The database file cannot be compacted while Active Directory is mounted (or online). An NTDS.DIT file that has been defragmented offline (compacted), can be much smaller than the NTDS.DIT file on its peers. However, defragmenting the NTDS.DIT file isn’t something you should really need to do. Normally, the database self-tunes and automatically tombstoning the records then sweeping them away when the tombstone lifetime has passed to make that space available for additional records. Defragging the NTDS.DIT file probably won’t help your AD queries go any faster in the long run.